In this paper we first give a procedure by which we generate a filter by a subset in a transitive $BE$-algebra, and give some characterizations of Noetherian and Artinian $BE$-algebras. Next we give the construction of quotient algebra $X/F$ of a transitive $BE$-algebra $X$ via a filter $F$ of $X$. Finally we discuss properties of Noetherian (resp. Artinian) $BE$-algebras on homomorphisms and prove that let $X$ and $Y$ be transitive $BE$-algebras, a mapping $f:\ X\rightarrow Y$ be an epimorphism. If $X$ is Noetherian (resp. Artinian), then so does $Y$. Conversely suppose that $Y$ and $Ker(f)$ (as a subalgebra of $X$) are Noetherian (resp. Artinian), then so does $X$. Let $X$ be a transitive $BE$-algebra and $F$ a filter of $X$. If $X$ is Noetherian (resp. Artinian), then so does the quotient algebra $X/F$.