This paper presents an analysis of models for Japanese short-term interest rate. The models are constructed based on mean reverting model using Bayesian method to capture the dynamics of short-term interest rate. The parameters of our models are estimated by marginal likelihood and posterior expectation and we shall make model selection using the information criterion EIC(extended information criterion). An application of the models will be implemented using weekly Japanese average interest rates on certificates of deposit (new issues) less than 30 days in the period from January 2001 to December 2008.